How to install smallrnaseq
on Red Hat Enterprise Linux

smallrnaseq

smallrnaseq

Damien Farrell (dmnfarrell)
  • Damien Farrell (dmnfarrell)
  • Science

command line tool for small rna seq analysis

smallrnaseq is a command line interface for processing of small RNA seq data from deep sequencing reads. Functionality includes the counting of known miRNAs, isomiRs, arbitrary non coding RNA genes and novel miRNA prediction.

Details for smallrnaseq

License
GPL-3.0+
Last updated
3 February 2019

Enable snaps on Red Hat Enterprise Linux and install smallrnaseq

Snaps are applications packaged with all their dependencies to run on all popular Linux distributions from a single build. They update automatically and roll back gracefully.

Snaps are discoverable and installable from the Snap Store, an app store with an audience of millions.

Enable snapd

Snap is available for Red Hat Enterprise Linux (RHEL) 7, from the 7.6 release onward, from the Extra Packages for Enterprise Linux (EPEL) repository.

It is not yet available in the EPEL 8 repository, and consequently, not yet available for RHEL 8 unless you build the RPM yourself.

The EPEL repository can be added to your system with the following command:

Adding the optional and extras repositories is also recommended:

sudo subscription-manager repos --enable "rhel-*-optional-rpms" --enable "rhel-*-extras-rpms" sudo yum update

Snap can now be installed as follows:

Once installed, the systemd unit that manages the main snap communication socket needs to be enabled:

To enable classic snap support, enter the following to create a symbolic link between /var/lib/snapd/snap and /snap:

Either log out and back in again or restart your system to ensure snap’s paths are updated correctly.

Install smallrnaseq

To install smallrnaseq, simply use the following command:

Other popular snaps…

See more...
See more in Featured

More things to do…

Get the snap store

Browse and find snaps from the convenience of your desktop using the snap store snap.

Learn more about snaps

Interested to find out more about snaps? Want to publish your own application? Visit snapcraft.io now.