How to install pymol-oss
on Ubuntu

pymol-oss

pymol-oss

Stefan Glasenhardt (glasen)

PyMOL is a molecular visualization system.

PyMOL is computer software, a molecular visualization system created by Warren Lyford DeLano. It is user-sponsored, open-source software, released under the Python License. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities. It is currently commercialized by Schrödinger, Inc. PyMOL can produce high-quality 3D images of small molecules and biological macromolecules, such as proteins. According to the original author, by 2009, almost a quarter of all published images of 3D protein structures in the scientific literature were made using PyMOL.

This is the Open Source version of PyMOL. The source code is availabe on GitHub:

https://github.com/schrodinger/pymol-open-source

The commercial version with additional features is available on "https://pymol.org".

Details for pymol-oss

License
X11
Last updated
14 November 2019

Enable snaps on Ubuntu and install pymol-oss

Snaps are applications packaged with all their dependencies to run on all popular Linux distributions from a single build. They update automatically and roll back gracefully.

Snaps are discoverable and installable from the Snap Store, an app store with an audience of millions.

Enable snapd

If you’re running Ubuntu 16.04 LTS (Xenial Xerus) or later, including Ubuntu 18.04 LTS (Bionic Beaver), Ubuntu 18.10 (Cosmic Cuttlefish) and Ubuntu 19.04 (Disco Dingo), you don’t need to do anything. Snap is already installed and ready to go.

For versions of Ubuntu between 14.04 LTS (Trusty Tahr) and 15.10 (Wily Werewolf), as well as Ubuntu flavours that don’t include snap by default, snap can be installed from the Ubuntu Software Centre by searching for snapd.

Alternatively, snapd can be installed from the command line:

sudo apt update sudo apt install snapd

Either log out and back in again, or restart your system, to ensure snap’s paths are updated correctly.

Install pymol-oss

To install pymol-oss, simply use the following command:

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Get the snap store

Browse and find snaps from the convenience of your desktop using the snap store snap.

Learn more about snaps

Interested to find out more about snaps? Want to publish your own application? Visit snapcraft.io now.