How to install gigi2
on Fedora

gigi2

gigi2

ttbek

GIGI2

GIGI2 is a computer program to impute missing genotypes on pedigrees. The approach handles large pedigrees by using a Markov Chain Monte Carlo-based program to infer inheritance vectors. Our approach has 2 steps: 1. use the program gl_auto from the MORGAN package to infer inference vectors using genotypes from informative framework markers 2. use GIGI to impute missing genotypes.
Note 1: gl_auto and MORGAN are NOT included in this snap, gl_auto should be obtained through its own channels. GIGI2 inputs are outputs from gl_auto.
Note 2: The strict confinement of this app limits where it can write to. To allow it to write in your home directory, you need to attach the home interface to the snap. Likewise if you need to write to external devices mounted in /mnt or /media.
e.g. 'snap connect gigi2:home :home' to be able to write in your /home/user and 'snap connect gigi2:removable-media :removable-media' to write in /mnt/vol_name and /media/vol_name If you need to write to other locations, then you will need to install the snap in devmode, e.g. 'snap install --devmode gigi2' If it was already installed and you need to install in devmode, then I recommend first removing the currently installed version, 'snap remove gigi2'

Details for gigi2

License
Proprietary
Last updated
25 November 2018

Enable snaps on Fedora and install gigi2

Snaps are applications packaged with all their dependencies to run on all popular Linux distributions from a single build. They update automatically and roll back gracefully.

Snaps are discoverable and installable from the Snap Store, an app store with an audience of millions.

Enable snapd

Snap can be installed on Fedora from the command line:

Either log out and back in again, or restart your system, to ensure snap’s paths are updated correctly.

To enable classic snap support, enter the following to create a symbolic link between /var/lib/snapd/snap and /snap:

Install gigi2

To install gigi2, simply use the following command:

Other popular snaps…

See more...
See more in Featured

More things to do…

Get the snap store

Browse and find snaps from the convenience of your desktop using the snap store snap.

Learn more about snaps

Interested to find out more about snaps? Want to publish your own application? Visit snapcraft.io now.